Exploration of Volatile Compounds of Microalgae Spirulina platensis as an Inhibitory α-glucosidase Candidate: In Silico Approach
Exploration of Volatile Compounds of Microalgae Spirulina platensis as an Inhibitory α-glucosidase Candidate: In Silico Approach
DOI:
https://doi.org/10.21009/JRSKT.092.09Keywords:
Spirulina platensis, α-glucosidase, molecular docking, in silico, antidiabeticAbstract
Inhibitors of α-glucosidase are one of the important therapies in controlling diabetes mellitus, a metabolic disease with an increasing global prevalence that requires safer treatment alternatives. This study aims to explore the potential of bioactive compounds from Spirulina platensis as antidiabetic candidates using an in-silico approach. The research methods include analysis of bioactive components through GC-MS, prediction of physicochemical properties, pharmacokinetics, and toxicity (ADME-T), validation of docking methods, and simulation of molecular docking against α-glucosidase enzyme (PDB ID: 2QMJ). The results showed that the ten best compounds met the drug-likeness criteria and had good ADME-T profiles, including 3-Buten-2-one; 4-(2,6,6-trimethyl-1-cyclohexen-1-yl)- (β-ionone); 2(4H)-Benzofuranone, 5,6,7,7a-tetrahydro-4,4,7a-trimethyl-; (R)- (Dihydroactinidiolide), 3,7,11-Trimethyl-1-dodecanol (Farnesanol); 9-Octadecen-1-ol, (Z)- (Oleyl Alcohol), Cyclohexanol, 2-methyl-5-(1-methylethyl)-; (1. alpha.,2. beta.,5. alpha.)- ((+)-Carvomenthol); Levomenthol, 2-Buten-1-one; 1-(2,6,6-trimethyl-1-cyclohexen-1-yl)-(Damascone); 2,2,6,7-Tetramethyl-10-oxatricyclo[4.3.0.1(1. 7)] decan-5-one (Ketalactone); 7-Acetyl-3,3-dimethylbicyclo [4.1.0] heptan-2-one (7-Acetyl-Bicycloheptanone); and Acetic acid,6,6-dimethyl-2-methylene-7-(3-oxobutylidene) oxepan-3-ylmethyl ester (ADM-ester). The docking results show that some compounds have good binding affinity and are able to form stable interactions with active residues of α-glucosidase. Spirulina platensis has potential as a source of natural α-glucosidase inhibitor candidates for antidiabetic therapy.
References
Aissaoui, O., Amiali ,Malek, Bouzid ,Nora, Belkacemi ,Khaled, & and Bitam, A. (2017). Effect of Spirulina platensis ingestion on the abnormal biochemical and oxidative stress parameters in the pancreas and liver of alloxan-induced diabetic rats. Pharmaceutical Biology, 55(1), 1304–1312. https://doi.org/10.1080/13880209.2017.1300820
Alam, M., Ma, S., Quamri, M., Fatima, S., Roqaiya, M., & Ahmed, N. (2016). Efficacy of Spirulina (Tahlab) in Patients of Type 2 Diabetes Mellitus (Ziabetus Shakri) -A Randomized Controlled Trial. Journal of Diabetes & Metabolism, 7, 710. https://doi.org/10.4172/2155-6156.1000710
Anandhy, K. D. (2021). Studi Komputasi Profil Farmakokinetik, Toksisitas dan Molecular Docking Kandungan Senyawa Daun Insulin (Tithonia diversifolia Hemsl A. Gray) pada Berbagai Target Protein Terapi Nefropati Diabetik [Thesis (Sarjana), Universitas Brawijaya]. https://repository.ub.ac.id/id/eprint/187596
Chan, M. (2016). Global Report on Diabetes. World Health Organization.
Chaudhary, K., & Mishra, N. (2016). A Review on Molecular Docking: Novel Tool for Drug Discovery. JSM Chemistry, 4, 1029.
Dallakyan, S., & Olson, A. J. (2015). Small-Molecule Library Screening by Docking with PyRx. In J. E. Hempel, C. H. Williams, & C. C. Hong (Eds.), Chemical Biology: Methods and Protocols (pp. 243–250). Springer New York. https://doi.org/10.1007/978-1-4939-2269-7_19
Dona, R., Frimayanti, N., Ikhtiarudin, I., Iskandar, B., Maulana, F., & Silalahi, N. T. (2019). Studi In Silico, Sintesis, dan Uji Sitotoksik Senyawa P-Metoksi Kalkon terhadap Sel Kanker Payudara MCF-7. Jurnal Sains Farmasi & Klinis, 6(3), 243–249. https://doi.org/10.25077/jsfk.6.3.243-249.2019
FENG, Y., Nan, H., ZHOU, H., XI, P., & Li, B. (2022). Mechanism of inhibition of α-glucosidase activity by bavachalcone. Food Science and Technology, 42. https://doi.org/10.1590/fst.123421
Gheda, S. F., Abo-Shady, A. M., Abdel-Karim, O. H., & Ismail, G. A. (2021). Antioxidant and Antihyperglycemic Activity of Arthrospira platensis (Spirulina platensis) Methanolic Extract: In vitro and in vivo Study. Egyptian Journal of Botany, 61(1), 71–93. https://doi.org/10.21608/ejbo.2020.27436.1482
Holidah, D., Yasmin, Y., & Christianty, F. (2018). Uji Aktivitas Antidiabetes Ekstrak Teh Hitam dan Teh Hijau secara In Vitro Menggunakan Metode Inhibisi Enzim α-Glukosidase. Pustaka Kesehatan, 6, 235. https://doi.org/10.19184/pk.v6i2.7573
Jyske, T., Järvenpää, E., Kunnas, S., Sarjala, T., Raitanen, J.-E., Mäki, M., Pastell, H., Korpinen, R., Kaseva, J., & Tupasela, T. (2020). Sprouts and Needles of Norway Spruce (Picea abies (L.) Karst.) as Nordic Specialty—Consumer Acceptance, Stability of Nutrients, and Bioactivities during Storage. Molecules, 25(18). https://doi.org/10.3390/molecules25184187
Kusumawati, N., Haryoto, H., & Indrayudha, P. (2021). Penghambatan Enzim Alpha-Glukosidase oleh Daun Mimba (Azadirachta indica) dan Rimpang Temu Mangga (Curcuma mangga). Jurnal Kefarmasian Indonesia, 56–64. https://doi.org/10.22435/jki.v11i1.3950
Laoufi, H., Nabila, B., Adjdir, S., & Rabah, D. (2017). In vitro α-amylase and α-glucosidase inhibitory activity of Ononis angustissima extracts. 7, 191–198. https://doi.org/10.7324/JAPS.2017.70227
Lipinski, C. A. (2004). Lead-and drug-like compounds: The rule-of-five revolution. Drug Discovery Today: Technologies, 1(4), 337–341.
Liu, S.-K., Hao, H., Bian, Y., Ge, Y.-X., Lu, S., Xie, H.-X., Wang, K.-M., Tao, H., Yuan, C., Zhang, J., Zhang, J., Jiang, C.-S., & Zhu, K. (2021). Discovery of New α-Glucosidase Inhibitors: Structure-Based Virtual Screening and Biological Evaluation. Frontiers in Chemistry, Volume 9-2021. https://www.frontiersin.org/journals/chemistry/articles/10.3389/fchem.2021.639279
Mane, R. S., & Chakraborty, B. (2018). Phytochemical screening of Spirulina platensis extracts from Rankala Lake Kolhapur, India. Journal of Alga Biomass Utilization, 9(4), 38–41.
Na’Allah, A., Ayipo, Y., Komolafe, D., Solihu, S., Bamidele, B., Alabi, M., Balogun, A.-A., Abdulazeez, A., & Mordi, M. (2021). Phytochemical screening and in silico pharmacological profiling of ethanolic extract of Aframomum melegueta for prostate carcinoma. Journal of Applied Pharmaceutical Science, 11, 132–145. https://doi.org/10.7324/JAPS.2021.110715
Nasirian, F., Dadkhah ,Masoumeh, Moradi-kor ,Nasrollah, & and Obeidavi, Z. (2018). Effects of Spirulina platensis microalgae on antioxidant and anti-inflammatory factors in diabetic rats. Diabetes, Metabolic Syndrome and Obesity, 11(null), 375–380. https://doi.org/10.2147/DMSO.S172104
Nurfadhila, L., Utami, M., Pratiwi, D., Qhoirul, D., Martia, E., Jana, I., & Lamsar, A. (2023). Potensi Senyawa Turunan Xanton dari Kulit Buah Manggis (Garcinia mangostana L.) Sebagai Inhibitor Protein Mycobacterium tuberculosis: Studi In Silico. PharmaCine : Journal of Pharmacy, Medical and Health Science, 3, 55–63. https://doi.org/10.35706/pc.v3i2.7847
Pantsar, T., & Poso, A. (2018). Binding Affinity via Docking: Fact and Fiction. Molecules, 23(8). https://doi.org/10.3390/molecules23081899
Paraskevopoulou, A., Kaloudis, T., Hiskia, A., Steinhaus, M., Dimotikali, D., & Triantis, T. M. (2024). Volatile Profiling of Spirulina Food Supplements. Foods, 13(8). https://doi.org/10.3390/foods13081257
Pires, D. E. V., Blundell, T. L., & Ascher, D. B. (2015). pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures. Journal of Medicinal Chemistry, 58(9), 4066–4072. https://doi.org/10.1021/acs.jmedchem.5b00104
Pollastri, M. P. (2010). Overview on the Rule of Five. Current Protocols in Pharmacology, 49(1), 9.12.1-9.12.8. https://doi.org/10.1002/0471141755.ph0912s49
Shen, C., Hu, X., Gao, J., Zhang, X., Zhong, H., Wang, Z., Xu, L., Kang, Y., Cao, D., & Hou, T. (2021). The impact of cross-docked poses on performance of machine learning classifier for protein–ligand binding pose prediction. Journal of Cheminformatics, 13(1), 81. https://doi.org/10.1186/s13321-021-00560-w
Tao, X., Huang, Y., Wang, C., Chen, F., Yang, L., Ling, L., Che, Z., & Chen, X. (2019). Recent developments in molecular docking technology applied in food science: A review. International Journal of Food Science & Technology, 55. https://doi.org/10.1111/ijfs.14325
Tiwuk Susantiningsih, Fadilah Fadilah, Ani Retno Prijanti, & Novi Silvia Hardiany. (2024). Molecular Insights into Spirulina platensis Compounds Targeting TNFa and P21 in Delaying Cellular Senescence Mechanisms: An In Silico Approach. Pharmacognosy Journal, 16(4).
Touhtouh, J., Laghmari, M., Benali, T., Tarik, A., Mohamed, A., Goh, K. W., Alabdulmonem, W., Bouyahya, A., Zengin, G., & Hammani, K. (2024). Evaluation of antioxidant, antimicrobial, antidiabetic, anti-tyrosinase, and neuroprotective effects of β-ionone: In vitro and in silico analysis. Results in Chemistry, 12, 101874. https://doi.org/10.1016/j.rechem.2024.101874
Velázquez-Libera, J. L., Durán-Verdugo, F., Valdés-Jiménez, A., Núñez-Vivanco, G., & Caballero, J. (2020). LigRMSD: a web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking. Bioinformatics, 36(9), 2912–2914. https://doi.org/10.1093/bioinformatics/btaa018
Weni, M., Safithri, M., & Seno, D. (2020). Molecular Docking of Active Compounds Piper crocatum on the A-Glucosidase Enzyme as Antidiabetic. Indonesian Journal of Pharmaceutical Science and Technology, 7, 64. https://doi.org/10.24198/ijpst.v7i2.21120
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