Bioprospecting secondary metabolites from Streptomyces sp. HPM-9-01/B9-A from South Kalimantan as a potential antibiotic candidate
DOI:
https://doi.org/10.21009/bioma.v22i1.60548Keywords:
actinobacteria, Streptomyces sp., South Kalimantan, antibiotic candidateAbstract
Actinobacteria of the genus Streptomyces are widely recognised as a major reservoir of antibiotics. These bacteria occur abundantly in diverse environments, including soil, freshwater, and marine ecosystems. In this study, we employed isolation, characterisation, and analytical approaches encompassing morphological, genomic, and metabolomic techniques to investigate the potential of isolate HPM-9-01/B9-A, obtained from a pine forest in Mentaos, South Kalimantan, as a candidate for antibiotic production. Morphological characterisation combined with 16S rRNA sequencing identified the strain as Streptomyces albulus. Antibacterial assays demonstrated inhibitory activity against five pathogenic bacteria, with a strong inhibition zone of 16.75 ± 2.50 mm observed for Salmonella typhimurium. LC-MS analysis, supported by secondary metabolite identification using MassLynx and ChemSpider, revealed three major compounds: C10H16N7O2, C12H18NO3, and C17H21N4O5. These metabolites are predicted to possess antibacterial and neuroactive properties. Collectively, these findings highlight the promising potential of Streptomyces sp. isolate HPM-9-01/B9-A as a source of novel antibiotic compounds.
References
Ardiansah, N., Ifaya, M., & Fauziah, R. (2025). Uji Aktivitas Antimikroba Ekstrak Etanol Daun Meistera chinensis terhadap Bakteri Escherichia coli dan Jamur Candida albicans. Jurnal Pharmacia Mandala Waluya, 4(2), 142–155. https://doi.org/10.54883/jpmw.v4i2.313.
Ariyanti, D., Nuhamunada, M., Izzati, N., Fitriana, M., Widyaningrum, A. R., Sanka. I., Kusuma, A.B. (2026). The draft genome sequence of Kitasatospora sp. HPM-01-4 isolated from the pine forest Mentaos, heart of Borneo, Indonesia. Microbiology Resource Announcement, 15(4). https://doi.org/10.1128/mra.00739-25.
Aslam, B., Wang, W., Arshad, M. I., Khurshid, M., Muzammil, S., Rasool, M. H., et al. (2018). Antibiotic Resistance: A rundown of A Global Crisis. Infect Drug Resist., 11, 1645–1658. https://doi.org/10.2147/IDR.S173867.
Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016). Methods for in vitro evaluating antimicrobial activity: A review. Journal of Pharmaceutical Analysis, 6(2), 71–79. https://doi.org/10.1016/j.jpha.2015.11.005.
Barka, E. A., Vatsa, P., Sanchez, L., Gaveau-Vaillant, N., Jacquard, C., Meier-Kolthoff, J. P., et al. (2015). Correction for Barka et al., Taxonomy, Physiology, and Natural Products of Actinobacteria. Microbiol Mol Biol Rev., 80(1), 1–43. https://doi.org/10.1128/MMBR.00019-15.
Clinical and Laboratory Standards Institute. (2019). Performance standards for antimicrobial susceptibility testing (29th ed., CLSI Supplement M100). Clinical and Laboratory Standards Institute.
Davis, W. W., & Stout, T. R. (1971). Disc plate method of microbiological antibiotic assay. Applied Microbiology, 22(4), 659–665.
Geng, W., Yang, C., Gu, Y., Liu, R., Guo, W., Wang, X., Song, C., Wang, S. (2014). Cloning of ε-poly-L-lysine (ε-PL) synthetase gene from a newly isolated ε-PL-producing Streptomyces albulus NK660 and its heterologous expression in Streptomyces lividans. Microb Biotechnol., 7(2), 155–64. https://doi.org/10.1111/1751-7915.12108.
Gu, Y., Yang, C., Wang, X., Geng, W., Sun, Y., Feng, J., Wang, Y., Quan, Y., Che, Y., Zhang, C., Gong, T., Zhang, W., Gao, W., Zuo, Z., Song, C., Wang, S. (2014). Genome Sequence of the ε-Poly-l-Lysine-Producing Strain Streptomyces albulus NK660, Isolated from Soil in Gutian, Fujian Province, China. Genome Announc., 2(3), e00532-14. https://doi.org/10.1128/genomeA.00532-14.
Hasebe, F., Adachi, K., Yamanaka, K., et al. (2023). Constitutive and high gene expression in the diaminopimelate pathway accelerates ε-poly-L-lysine production in Streptomyces albulus. J Antibiot., 76, 522–531. https://doi.org/10.1038/s41429-023-00636-9.
Hashary, A. R. (2012). Potensi Actinomycetes yang Diisolasi dari Rhizosfer Pinus (Pinus merkusii) Asal Desa Limapoccoe Kecamatan Cenrana Kabupaten Maros sebagai Penghasil Antimikroba. Jurnal Farmasi UIN Alauddin Makassar, 9(2), 15-19. https://doi.org/10.24252/jfuinam.v9i2.26659.
Kumala, T., Jayuska, A., & Ardiningsih, P. (2015). Uji aktivitas antibakteri isolat Actinomycetes 9ISP1 dari spons asal perairan Pulau Randayan. Jurnal Kimia Khatulistiwa, 4(2), 30-36. https://jurnal.untan.ac.id/index.php/jkkmipa/article/view/9558.
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews, 46(1–3), 3–26. https://doi.org/10.1016/S0169-409X(00)00129-0.
Mahdalena, & Ardiningsih, P. (2019). Isolasi dan uji aktivitas antibakteri Actinomycetes berasosiasi dengan spons. Jurnal Kimia Khatulistiwa, 8(2), 28–33. https://jurnal.untan.ac.id/index.php/jkkmipa/article/view/36923.
Mangurana, W. O. I., Yusnaini, & Sahidin. (2019). Analisis LC-MS/MS (Liquid chromatography mass spectrometry) dan metabolit sekunder serta potensi antibakteri ekstrak n-heksana spons Callyspongia aerizusa yang diambil pada kondisi tutupan terumbu karang yang berbeda di perairan Teluk Staring. Jurnal Biologi Tropis, 19(2), 131–141. https://doi.org/10.29303/jbt.v19i2.1126.
Mast, Y., Stegmann, E. Actinomycetes: The Antibiotics Producers. (2019). Antibiotics, 8(3), 105. https://doi.org/10.3390/antibiotics8030105.
Simeis, D. D., Serra, S. (2021). Actinomycetes: A Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production. Antibiotics, 10(5), 483. https://doi.org/10.3390/antibiotics10050483.
Suloi, A. F. & Suhartini, W. (2022). Eksplorasi Bakteri Actinomycetes Asli Papua Barat sebagai Pewarna Makanan Alami dan Antimikroba. G-Tech: Jurnal Teknologi Terapan, 6(2), 142–148. https://doi.org/10.33379/gtech.v6i2.1522.
Wang, C., Ren, X., Yu, C., Wang, J., Wang, L., Zhuge, X., Liu, X. (2020). Physiological and Transcriptional Responses of Streptomyces albulus to Acid Stress in the Biosynthesis of ε-Poly-L-lysine. Front Microbiol. 19(11), 1379. https://doi.org/10.3389/fmicb.2020.01379.
Wink, J. M. (2024). Compendium of Actinobacteria. DSMZ–German Collection of Microorganisms and Cell Cultures. Retrieved August 2024, from https://www.dsmz.de/collection/catalogue/microorganisms/special-groups-of-organisms/compendium-of-actinobacteria.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Dwi Ariyanti, Maya Fitriana, Ali Budhi Kusuma, Matin Nuhamunada, Nurul Izzati, Aulia Reski Widyaningrum

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
